Table 3 The sensitivity of 18 methods on the Lindahl's dataset.
Method | Family | Superfamily | Fold | |||
|---|---|---|---|---|---|---|
Top1 | Top5 | Top1 | Top5 | Top1 | Top5 | |
PSI-Blast | 71.2 | 72.3 | 27.4 | 27.9 | 4 | 4.7 |
HMMER | 67.7 | 73.5 | 20.7 | 31.3 | 4.4 | 14.6 |
SAM-T98 | 70.1 | 75.4 | 28.3 | 38.9 | 3.4 | 18.7 |
BLASTLINK | 74.6 | 78.9 | 29.3 | 40.6 | 6.9 | 16.5 |
SSERCH | 68.6 | 75.5 | 20.7 | 32.5 | 5.6 | 15.6 |
SSHMM | 63.1 | 71.7 | 18.4 | 31.6 | 6.9 | 24 |
THREADER | 49.2 | 58.9 | 10.8 | 24.7 | 14.6 | 37.7 |
Fugue | 82.2 | 85.8 | 41.9 | 53.2 | 12.5 | 26.8 |
SPARKS | 81.6 | 88.1 | 52.5 | 69.1 | 28.7 | 47.7 |
SP3 | 81.6 | 86.8 | 55.3 | 67.7 | 30.8 | 47.4 |
HHpred | 82.9 | 87.1 | 58 | 70 | 25.2 | 39.4 |
SP4 | 80.9 | 86.3 | 57.8 | 57.8 | 30.8 | 53.6 |
SP5 | 82.4 | 87.6 | 59.8 | 70 | 37.9 | 58.7 |
RAPTOR | 86.6 | 89.3 | 56.3 | 69 | 38.2 | 58.7 |
SPARKS-X | 84.1 | 90.3 | 59.0 | 76.3 | 45.2 | 67.0 |
BoostThreader | 86.5 | 90.5 | 66.1 | 76.4 | 42.6 | 57.4 |
FOLDpro | 85 | 89.9 | 55 | 70 | 26.5 | 48.3 |
RF-fold | 84.5 | 91.5 | 63.4 | 79.3 | 40.8 | 58.3 |