LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches

Table 2 Physicochemical properties used to represent a protein for Laccase subclass prediction.

Sr. No.	Physicochemical property	Amino Acids	# features
1	log10(molecular weight)/7.0	-	1
2	log10(Sequence Length)/5.0	-	2
3	% Charged Residues	DREKH	3
4	% Hydrophilic and neutral	NQSTY	4
5	% basic polar/positively charged	HKR	5
6	% acidic or negatively charged	DE	6
7	% aliphatic	AGILV	7
8	% aromatic	FWY	8
9	% small	DNT	9
10	% tiny	AGPS	10
11	% large	FRWY	11
12	% hydrophobic and aromatic	WF	12
13	% hydrophobic and neutral	ACGILMFPWV	13
14	% amidic	NQ	14
15	% cyclic	P	15
16	% hydroxylic	ST	16
17	% contains sulfur	CM	17
18	% H-bonding	CWNQSTYKRHDE	18
19	% acidic and amide	DENQ	19
20	% ionizable	DEHCYKR	20
21	% sulfur bonding	C	21
22	% pI	-	22
23	Molecular weight/ 4000000.0	-	23
24	Sequence length / 38000.0	-	24

ISSN: 1471-2105