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Table 2 Physicochemical properties used to represent a protein for Laccase subclass prediction.

From: LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches

Sr. No. Physicochemical property Amino Acids # features
1 log10(molecular weight)/7.0 - 1
2 log10(Sequence Length)/5.0 - 2
3 % Charged Residues DREKH 3
4 % Hydrophilic and neutral NQSTY 4
5 % basic polar/positively charged HKR 5
6 % acidic or negatively charged DE 6
7 % aliphatic AGILV 7
8 % aromatic FWY 8
9 % small DNT 9
10 % tiny AGPS 10
11 % large FRWY 11
12 % hydrophobic and aromatic WF 12
13 % hydrophobic and neutral ACGILMFPWV 13
14 % amidic NQ 14
15 % cyclic P 15
16 % hydroxylic ST 16
17 % contains sulfur CM 17
18 % H-bonding CWNQSTYKRHDE 18
19 % acidic and amide DENQ 19
20 % ionizable DEHCYKR 20
21 % sulfur bonding C 21
22 % pI - 22
23 Molecular weight/ 4000000.0 - 23
24 Sequence length / 38000.0 - 24