Skip to main content

Table 3 Performance of different descriptors in clustering of Laccases using various SOM dimensions

From: LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches

SOM Dimensions AAC C of CTD CT DIPEP MA MBA Physico-Chemical Properties Sequence Order Coupling
5x5 13 11 12 5 8 13 12 18
5x6 13 15 5 5 4 15 13 22
6x5 12 14 8 5 5 16 12 24
6x6 13 15 11 6 5 18 13 16
7x7 9 17 7 7 6 22 11 39
8x8 11 13 9 9 11 14 14 45
CDVD 8.2E-5 2.5E-4 -0.13 -1.1E-4 -2.9E-2 4.7E-3 6.1E-3 -1.3E-4
DBI 0.89 0.48 0.95 0.61 0.62 0.42 0.37 0.12
  1. SOM: Self Organizing Map, AAC: Amino Acid Composition, DIPEP: Dipeptide Composition, CT: Conjoint Triad, C of CTD: Composition of CTD, MA: Moran Autocorrelation, MBA: Moreau-Broto Autocorrelation, CDVD: intercluster - intracluster variance, DBI: Davies-Bouldin Index.