LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches

Table 3 Performance of different descriptors in clustering of Laccases using various SOM dimensions

SOM Dimensions	AAC	C of CTD	CT	DIPEP	MA	MBA	Physico-Chemical Properties	Sequence Order Coupling
5x5	13	11	12	5	8	13	12	18
5x6	13	15	5	5	4	15	13	22
6x5	12	14	8	5	5	16	12	24
6x6	13	15	11	6	5	18	13	16
7x7	9	17	7	7	6	22	11	39
8x8	11	13	9	9	11	14	14	45
CDVD	8.2E-5	2.5E-4	-0.13	-1.1E-4	-2.9E-2	4.7E-3	6.1E-3	-1.3E-4
DBI	0.89	0.48	0.95	0.61	0.62	0.42	0.37	0.12

SOM: Self Organizing Map, AAC: Amino Acid Composition, DIPEP: Dipeptide Composition, CT: Conjoint Triad, C of CTD: Composition of CTD, MA: Moran Autocorrelation, MBA: Moreau-Broto Autocorrelation, CDVD: intercluster - intracluster variance, DBI: Davies-Bouldin Index.

ISSN: 1471-2105