Figure 1
From: Discovering co-occurring patterns and their biological significance in protein families
The overall process of our methodology is represented by a pipeline consisting of three algorithms. 0) the input is a set of sequences from the same protein family; 1) the published pattern discovery algorithm, which results in a list of patterns; 2) the published APC algorithm, which results in a set of APCs; and 3) the new Co-Occurrence Cluster algorithm, which cluster APCs by their co-occurrence scores.