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Table 5 Performance and information on each of the CASP8 targets.

From: LigandRFs: random forest ensemble to identify ligand-binding residues from sequence information alone

Target Target PDB id Number of residues Ligand Chemical Class Sen (%) Prec (%) MCC Ratio(%)§
T0391 3d89 157 FES Metal 44.44 80.00 0.58 5.73
T0406 3di5 167 NI   100.00 100.00 1.00 1.80
T0407 3e38 363 ZN ZN ZN   88.89 66.67 0.76 2.48
T0410 3d3l 541 FE   12.50 6.90 0.06 2.96
T0425 3czx 181 ZN   33.33 100.00 0.57 4.97
T0426 3da2 283 ZN   33.33 18.75 0.22 3.18
T0440 3dcp 275 FE ZN FE   100.00 42.86 0.64 3.27
T0444 2vux 326 FE   75.00 8.82 0.24 1.23
T0453 3ded 91 CA CA CA   25.00 33.33 0.26 4.40
T0457 3dev 320 MG   100.00 19.05 0.43 1.25
T0461 3dh1 189 ZN   100.00 27.27 0.51 1.59
T0470 3djb 223 MG   100.00 26.67 0.50 1.79
T0476 2k5c 108 ZN   100.00 100.00 1.00 3.70
T0478 3d19 283 MG FE   71.43 100.00 0.84 2.47
T0480 2k4x 55 ZN   75.00 75.00 0.73 7.27
T0487 3f73 685 MG   25.00 5.00 0.10 0.58
Average   61.50 50.65   2.79
T0394 3dcy 275 PO4 Non-metal 33.33 57.14 0.42 4.36
T0396 396 105 FAD   13.04 75.00 0.26 21.90
T0422 3d8b 357 ADP   41.18 38.89 0.37 4.76
T0430 3dlz 357 AMP   14.29 37.50 0.20 5.88
T0431 3dax 491 HEM   10.53 18.18 0.11 3.87
T0450 3da1 561 FAD   41.03 27.59 0.28 6.95
T0477 3dkp 242 ADP MG   60.00 50.00 0.53 4.13
T0483 3dls 335 ADP MG   39.13 42.86 0.37 6.87
T0485 3dlc 218 SAM   5.26 100.00 0.22 8.72
T0490 3dme 369 FAD   29.41 35.71 0.26 9.21
T0508 3dou 197 SAM   36.84 70.00 0.47 9.64
Average   29.46 50.26   7.84
  1. §It stands for the ratio of the number of ligand sites to the total number of residues of the protein chain.