Table 4 The comparisons of prediction accuracies (%) between SCMHBP and some methods.
From: SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptides
Method | HBPGO-TRN1000 | HBPGO-TST494 | HemeBind145 | TargetS311 | Mean test |
|---|---|---|---|---|---|
SCMHBP* | 85.90 ± 0.42 | 72.79 ± 1.21 | 67.24 ± 2.89 | 74.69 ± 2.48 | 71.57 ± 7.83 |
SVM-AAC | 91.00 | 64.57 | 66.21 | 75.56 | 68.78 |
SVM-DPC | 97.70 | 78.54 | 63.45 | 74.60 | 72.20 |
SVM-PSSM400 | 91.00 | 87.45 | 66.21 | 74.28 | 75.98 |
SVM-AAindex | 87.60 | 76.52 | 71.72 | 80.39 | 76.21 |
J48-AAC | 93.80 | 66.80 | 65.52 | 67.20 | 66.51 |
J48-DPC | 97.90 | 64.78 | 60.00 | 68.81 | 64.53 |
J48-PSSM400 | 97.70 | 75.30 | 61.38 | 62.38 | 66.35 |
J48-AAindex | 98.60 | 68.22 | 62.76 | 70.42 | 67.13 |
Bayes-AAC | 69.20 | 67.40 | 71.03 | 62.70 | 67.04 |
Bayes-DPC | 67.40 | 63.77 | 73.79 | 71.38 | 69.65 |
Bayes-PSSM400 | 57.80 | 55.30 | 85.52 | 82.64 | 74.49 |
Bayes-AAindex | 63.60 | 63.20 | 61.38 | 55.95 | 60.18 |
Mean accuracy | 84.55 | 69.63 | 69.02 | 72.00 | 70.22 |