|
Complex
|
Type
|
IFACEwat re-ranking time T
R
(second/~minute)
|
Expected MD refinement timeb to obtain at least 1 near native structure using
|
|---|
| | | |
ZDOCK
|
IFACEwat
|
|---|
| | | |
Rank of 1st Hit
|
MD time
|
Rank of 1st Hit
|
MD tìme
|
|---|
|
4CPA
|
E
|
489.9/8.2
|
51
|
51 * TDi
|
4
|
4 * TDi
|
|
1QA9
|
O
|
542.9/9.1
|
2
|
2 * TDi
|
1
|
TDi
|
|
2AYO
|
O
|
1109.8/18.5
|
32
|
32 * TDi
|
10
|
10 * TDi
|
|
2HLE
|
O
|
819.0/13.6
|
2
|
2 * TDi
|
1
|
TDi
|
|
2VDB
|
O
|
864.0/14.4
|
57
|
57 * TDi
|
18
|
18 * TDi
|
|
3BP8
|
O
|
500.8/8.3
|
11
|
11 * TDi
|
3
|
3 * TDi
|
|
1BGX
|
A
|
1215.4/20.2
|
-
|
2000 * TDi
|
1
|
TDi
|
|
1KXQ
|
AB
|
1289.5/21.5
|
-
|
2000 * TDi
|
1
|
TDi
|
|
2O3B
|
E
|
632.4/10.5
|
7
|
7 * TDi
|
5
|
5 * TDi
|
|
1YVB
|
E
|
855.5/14.2
|
-
|
2000 * TDi
|
2
|
2 * TDi
|
|
1FLE
|
E
|
564.0/9.4
|
6
|
6 * TDi
|
4
|
4 * TDi
|
|
1AK4
|
O
|
290.4/4.8
|
-
|
2000 * TDi
|
3
|
3 * TDi
|
|
1H9D
|
O
|
954.9/15.9
|
-
|
2000 * TDi
|
1
|
TDi
|
|
1HCF
|
O
|
738.7/12.3
|
-
|
2000 * TDi
|
1
|
TDi
|
|
1RV6
|
O
|
848.2/14.1
|
-
|
2000 * TDi
|
3
|
3 * TDi
|
|
1Z0K
|
O
|
859.6/14.3
|
-
|
2000 * TDi
|
1
|
TDi
|
|
2A9K
|
O
|
678.9/11.3
|
-
|
2000 * TDi
|
2
|
2 * TDi
|
|
2BTF
|
O
|
1130.1/18.8
|
6
|
6 * TDi
|
1
|
TDi
|
|
2OOR
|
O
|
1297.8/21.6
|
-
|
2000 * TDi
|
1
|
TDi
|
- aRe-ranking of 2000 predictions of each protein complex on an Intel Xeon CPU E5540@2.53GHz machine. bAssume that each conformation of each complex takes equivalent time during the MD simulation, i.e. TDi. "-" means ZDOCK does not obtain any hit in the corresponding case
