Table 3 Real running time T _R of the IFACEwat in re-ranking some of the protein complexes and the estimated formula of the MD time for the structural refinement stage of the IFACEwat results as compared to ZDOCK

4CPA

E

489.9/8.2

51

51 * T_Di

4

4 * T_Di

1QA9

O

542.9/9.1

2

2 * T_Di

1

T_Di

2AYO

O

1109.8/18.5

32

32 * T_Di

10

10 * T_Di

2HLE

O

819.0/13.6

2

2 * T_Di

1

T_Di

2VDB

O

864.0/14.4

57

57 * T_Di

18

18 * T_Di

3BP8

O

500.8/8.3

11

11 * T_Di

3

3 * T_Di

1BGX

A

1215.4/20.2

-

2000 * T_Di

1

T_Di

1KXQ

AB

1289.5/21.5

-

2000 * T_Di

1

T_Di

2O3B

E

632.4/10.5

7

7 * T_Di

5

5 * T_Di

1YVB

E

855.5/14.2

-

2000 * T_Di

2

2 * T_Di

1FLE

E

564.0/9.4

6

6 * T_Di

4

4 * T_Di

1AK4

O

290.4/4.8

-

2000 * T_Di

3

3 * T_Di

1H9D

O

954.9/15.9

-

2000 * T_Di

1

T_Di

1HCF

O

738.7/12.3

-

2000 * T_Di

1

T_Di

1RV6

O

848.2/14.1

-

2000 * T_Di

3

3 * T_Di

1Z0K

O

859.6/14.3

-

2000 * T_Di

1

T_Di

2A9K

O

678.9/11.3

-

2000 * T_Di

2

2 * T_Di

2BTF

O

1130.1/18.8

6

6 * T_Di

1

T_Di

2OOR

O

1297.8/21.6

-

2000 * T_Di

1

T_Di