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Table 5 Relative performance of MPSS and PW distances for SCOP Superfamilies.

From: Automatic classification of protein structures using low-dimensional structure space mappings

 

CE

CE(Z)

Dali

Dali(Z)

FATCAT

FATCAT(Z)

MATT

MATT(Z)

Z : Raw

1.500

1.003

1.083

1.037

CMDS : PW

1.415

1.000

0.893

0.894

1.075

0.963

1.041

0.998

SMACOF : PW

1.359

1.008

1.079

1.077

1.037

0.912

1.057

0.998

SMACOF : CMDS

0.960

1.008

1.207

1.204

0.965

0.948

1.015

1.000

  1. The relative performance for Superfamily prediction of both raw and probability (Z) scores are given for each aligner, as are the relative performances of MPSS of both types (CMDS and SMACOF) versus pairwise distances (PW) as well as each other. Relative performance is expressed as ratios of AUC values, with ratios greater than one presented in bold. In each case, the MPSS with the highest AUC is used.
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BMC Bioinformatics

ISSN: 1471-2105

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