Table 5 Performance of decision tree prediction using rule sets derived from different ontologies.
From: Extracting rate changes in transcriptional regulation from MEDLINE abstracts
Model | TP | FP | FN | TN | Prec.(%) | Rec.(%) | F1(%) | Acc.(%) |
|---|---|---|---|---|---|---|---|---|
BioInfer ontology | 223 | 121 | 134 | 831 | 64.83 | 62.46 | 63.62 | 80.52 |
GeneReg ontology | 235 | 109 | 122 | 843 | 68.31 | 65.83 | 67.05 | 82.35 |
Regulation rate change ontology | 276 | 107 | 81 | 845 | 72.06 | 77.31 | 74.59 | 85.64 |
Combined ontologies | 277 | 99 | 80 | 853 | 73.67 | 77.59 | 75.58 | 86.33 |