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Table 5 Performance of decision tree prediction using rule sets derived from different ontologies.

From: Extracting rate changes in transcriptional regulation from MEDLINE abstracts

Model TP FP FN TN Prec.(%) Rec.(%) F1(%) Acc.(%)
BioInfer ontology 223 121 134 831 64.83 62.46 63.62 80.52
GeneReg ontology 235 109 122 843 68.31 65.83 67.05 82.35
Regulation rate change ontology 276 107 81 845 72.06 77.31 74.59 85.64
Combined ontologies 277 99 80 853 73.67 77.59 75.58 86.33