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Figure 1 | BMC Bioinformatics

Figure 1

From: Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space

Figure 1

Molecular fragment replacement process. A protein structure is shown on the left, rendered with VMD [67] using the NewCartoon graphical representation. The protein structure is scanned one fragment at a time from the N- to the C-terminus. The first fragment is highlighted in red. The position of the fragment in the fragment library is identified, and the entry in the BOW vector at that particular position is incremented. After the entire structure is scanned, the resulting BOW vector is the one supplied to LDA.

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BMC Bioinformatics

ISSN: 1471-2105

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