Table 4 Comparison of # correct merges with and without considering quality scores during the probability estimation using k-mer counts
From: CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing
dataset | # reads | #correct merges | increase by q-score (%) | |
|---|---|---|---|---|
| Â | Â | (without) | (with) | Â |
A4 | 1,000,000 | 967,842 | 967,875 | 0.003410 |
A5 | 1,000,000 | 997,201 | 997,211 | 0.001003 |
S4 | 1,000,000 | 960,986 | 960,984 | -0.000208 |
S5 | 1,000,000 | 997,303 | 997,303 | 0.000000 |
C1 | 716,366 | 667,421 | 667,165 | -0.038357 |
C2 | 1,350,602 | 1,233,831 | 1,233,012 | -0.066379 |
PA | 673,845 | 658,631 | 658,648 | 0.002581 |