Table 1 Summary of the results of ProbeAlign and CMsearch on the RMARK3 dataset.
Rfam ID | Name | Identity | # Tests | # Predictions | CMsearch | ProbeAlign | ||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | TP | FP | TP | FP |
RF00005 | tRNA | 44% | 20 | 61 | 10 | 51 | 16 | 45 |
RF00007 | U12 | 61% | 7 | 8 | 7 | 1 | 6 | 2 |
RF00013 | 6S | 43% | 38 | 24 | 21 | 3 | 24 | 0 |
RF00017 | SRP_euk_arch | 46% | 21 | 24 | 19 | 5 | 21 | 3 |
RF00020 | U5 | 52% | 22 | 23 | 19 | 4 | 22 | 1 |
RF00023 | tmRNA | 48% | 59 | 59 | 58 | 1 | 57 | 2 |
RF00028 | Intron_gpl | 34% | 20 | 5 | 4 | 1 | 5 | 0 |
RF00030 | RNase_MRP | 44% | 28 | 36 | 16 | 20 | 22 | 14 |
RF00066 | U7 | 62% | 2 | 1 | 1 | 0 | 0 | 1 |
RF00080 | yybP-ykoY | 46% | 13 | 13 | 13 | 0 | 10 | 3 |
RF00104 | mir-10 | 58% | 2 | 1 | 0 | 1 | 1 | 0 |
RF00114 | S15 | 61% | 8 | 11 | 8 | 3 | 7 | 4 |
RF00140 | Alpha_RBS | 65% | 3 | 4 | 1 | 3 | 3 | 1 |
RF00165 | Corona_pk3 | 68% | 1 | 4 | 0 | 4 | 1 | 3 |
RF00177 | SSU_rRNA_5 | 49% | 13 | 17 | 12 | 5 | 13 | 4 |
RF00230 | T-box | 46% | 48 | 50 | 46 | 4 | 47 | 3 |
RF00504 | Glycine | 50% | 14 | 14 | 14 | 0 | 13 | 1 |
RF00515 | PyrR | 46% | 29 | 38 | 25 | 13 | 28 | 10 |
RF00534 | SgrS | 48% | 3 | 2 | 0 | 2 | 1 | 1 |
RF00548 | U11 | 57% | 8 | 11 | 7 | 4 | 5 | 6 |
RF00640 | MIR167_1 | 53% | 10 | 9 | 8 | 1 | 7 | 2 |
RF00645 | MIR169_2 | 52% | 21 | 21 | 21 | 0 | 20 | 1 |
RF00661 | mir-31 | 57% | 3 | 3 | 2 | 1 | 3 | 0 |
RF01052 | Arthropod_7SK | 65% | 2 | 3 | 0 | 3 | 2 | 1 |
RF01066 | 6C | 67% | 1 | 2 | 1 | 1 | 0 | 2 |
RF01069 | purD | 56% | 8 | 9 | 8 | 1 | 7 | 2 |
RF01296 | snoU85 | 62% | 2 | 6 | 1 | 5 | 2 | 4 |
| Â | Overall | Â | 406 | 459 | 322 | 137 | 343 | 116 |