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Table 1 Summary statistics of each method with various sampling depths.

From: Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq

Methods sensitivity precision correlation (long transcripts only)
10M 20M 30M 10M 20M 30M 10M 20M 30M
Astroid(γ = 0) 79.28% 91.71% 94.30% 51.44% 80.23% 86.61% .805 (.801) .870(.868) .922(.919)
Astroid(γ = 30) 79.20% 91.76% 94.22% 51.31% 80.01% 86.28% .808(.805) .872(.869) .918(.914)
Astroid(γ = 50) 79.08% 91.64% 93.87% 51.18% 79.47% 85.78% .808(.806) .874(.870) .912(.919)
Cufflinks 49.43% 74.48% 81.50% 51.31% 75.75% 79.55% .106(.631) -.033 (.773) -.018(.808)
IsoLasso 2.86% 23.97% 45.83% 19.83% 75.26% 85.81% -.027 (.356) 0.116 (.559) .011 (.755)
Scripture 38.51% 62.13% 74.04% 12.46% 26.34% 39.74% N/A N/A N/A
Trinity 3.36% 13.01% 23.04% 1.74% 6.13% 12.32% N/A N/A N/A
  1. Correlation values in parentheses are calculated on only long transcripts (length > 300 bp, detailed counts in Supplementary Table 1.