Table 1 Summary statistics of each method with various sampling depths.
From: Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq
Methods | sensitivity | precision | correlation (long transcripts only) | ||||||
|---|---|---|---|---|---|---|---|---|---|
10M | 20M | 30M | 10M | 20M | 30M | 10M | 20M | 30M | |
Astroid(γ = 0) | 79.28% | 91.71% | 94.30% | 51.44% | 80.23% | 86.61% | .805 (.801) | .870(.868) | .922(.919) |
Astroid(γ = 30) | 79.20% | 91.76% | 94.22% | 51.31% | 80.01% | 86.28% | .808(.805) | .872(.869) | .918(.914) |
Astroid(γ = 50) | 79.08% | 91.64% | 93.87% | 51.18% | 79.47% | 85.78% | .808(.806) | .874(.870) | .912(.919) |
Cufflinks | 49.43% | 74.48% | 81.50% | 51.31% | 75.75% | 79.55% | .106(.631) | -.033 (.773) | -.018(.808) |
IsoLasso | 2.86% | 23.97% | 45.83% | 19.83% | 75.26% | 85.81% | -.027 (.356) | 0.116 (.559) | .011 (.755) |
Scripture | 38.51% | 62.13% | 74.04% | 12.46% | 26.34% | 39.74% | N/A | N/A | N/A |
Trinity | 3.36% | 13.01% | 23.04% | 1.74% | 6.13% | 12.32% | N/A | N/A | N/A |