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Table 1 Summary of LEARatios for the IAOseq and the five commonly used quantification methods performed on different strand overlapping genes.

From: IAOseq: inferring abundance of overlapping genes using RNA-seq data

 

Mean

Median

Standard deviation

P value

(Wilcoxon test)

P value

(Ansari-Bradley test)

IAOseq

0.53

0.05

5.70

---

---

Cufflinks

1.87

0.13

5.50

2.3e-08

3.6e-03

Isoem

3.22

0.65

3.70

2.2e-16

2.1e-09

RSEM

3.21

0.69

3.64

2.2e-16

9.8e-10

eXpress

-0.13

0.33

14.4

2.2e-16

4.2e-03

Bitseq

2.80

0.53

3.68

2.6e-10

1.9e-07

  1. To test the significance of performance difference between IAOseq and the five commonly used quantification methods, we used Wilcoxon rank test for the median difference and Ansari-Bradley two-sample test for the variance difference of LEARatios.
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BMC Bioinformatics

ISSN: 1471-2105

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