Skip to main content

Table 1 Summary of LEARatios for the IAOseq and the five commonly used quantification methods performed on different strand overlapping genes.

From: IAOseq: inferring abundance of overlapping genes using RNA-seq data

  Mean Median Standard deviation P value
(Wilcoxon test)
P value
(Ansari-Bradley test)
IAOseq 0.53 0.05 5.70 --- ---
Cufflinks 1.87 0.13 5.50 2.3e-08 3.6e-03
Isoem 3.22 0.65 3.70 2.2e-16 2.1e-09
RSEM 3.21 0.69 3.64 2.2e-16 9.8e-10
eXpress -0.13 0.33 14.4 2.2e-16 4.2e-03
Bitseq 2.80 0.53 3.68 2.6e-10 1.9e-07
  1. To test the significance of performance difference between IAOseq and the five commonly used quantification methods, we used Wilcoxon rank test for the median difference and Ansari-Bradley two-sample test for the variance difference of LEARatios.