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Table 7 Results of KB-oriented evaluation for Q3 (Find the protein in the context of binding) and Q4 (Find the protein pairs binding to each other).

From: Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task

 

Q4 (pair Binding)

Q4 (pair Binding)

 

P

TP

R / P / F

P

TP

R / P / F

GS

300

300

-

83

83

-

EVEX

324

182

60.67 / 56.17 / 58.33

122

27

32.53 / 22.13 / 26.34

TEES-2.1

336

188

62.67 / 55.95 / 59.12

144

32

38.55 / 22.22 / 28.19

BioSEM

355

182

60.67 / 51.27 / 55.57

114

21

25.30 / 18.42 / 21.32

NCBI

318

177

59.00 / 55.66 / 57.28

167

24

28.92 / 14.37 / 19.20

DlutNLP

352

193

64.33 / 54.83 / 59.20

179

25

30.12 / 13.97 / 19.08

HDS4NLP

393

219

73.00 / 55.73 / 63.20

72

15

18.07 / 20.83 / 19.35

NICTANLM

369

175

58.33 / 47.43 / 52.32

177

21

25.30 / 11.86 / 16.15

USheff

252

156

52.00 / 61.90 / 56.52

43

13

15.66 / 30.23 / 20.63

UZH

255

143

47.67 / 56.08 / 51.53

0

0

00.00 / 00.00 / 00.00

HCMUS

491

207

69.00 / 42.16 / 52.34

75

19

22.89 / 25.33 / 24.05

  1. Acronyms: GS=gold standard, P=positives, TP=true positives, R=recall, P=precision, F=f-score.