Figure 5From: VisRseq: R-based visual framework for analysis of sequencing dataWorkflow of gene expression analysis in case study 1. (a) Heat map with dendogram plot, and (b) MDS plot, showing the transcriptional correlation. (c-f) scatter and bar plots showing the genes up-regulated (blue color and labeled "1"), down-regulated (red color and labeled "-1") or non-differentially expressed (green color and labeled "0") based on DESeq and edgeR Apps with replicates ("DR" and "ER", respectively) or without replicates ("D" and "E", respectively). The results for pair-wise comparison of DR, ER, D, and E runs have been shown as Venn diagrams for up-regulated and down-regulated genes. (g) Native scatter plot app showing the intersection between the result of DR (DESeq with replicates) and D (DESeq without replicates) runs for up ("1") vs. down ("-1") regulated genes. The rectangle filter in native scatter plot is used to create the four subsets for Venn diagrams (h-k).Back to article page