The pan-genome map visualisation of Staphylococcus aureus. The map is shown with strand encoding, where in addition the direction colouring scheme was used. The strand encoding makes the inconsistent annotation of forward and reverse strand of the selected strain (TCH60) clearly visible. The size of the whole image of the pan-genome map can be estimated based on the current viewable area (indicated by red outlined rectangle) in the overview panel. After manual corrections (aggregations), the user is informed by the impact of the performed manual changes in the data summary panel in the lower right (number in brackets).