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Table 3 Comparison of SpliceJumper, TopHat2 and MapSplice2 on simulated Test2 dataset when the slack value is 8.

From: SpliceJumper: a classification-based approach for calling splicing junctions from RNA-seq data

Tools False positive False negative True positive Precision Recall F-value
SpliceJumper 334 969 14,769 0.9779 0.9384 0.9578
TopHat2 717 1,784 13,954 0.9511 0.8866 0.9178
MapSplice2 358 1,151 14,587 0.9760 0.9269 0.9508
  1. False positive: the number of called out junctions that are actually false ones. False negative: the number of not called out junctions that are actually true ones. True positive: the number of called out junctions that are actually true ones.