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Table 2 Performance of breakpoint detection for different types of rearrangement in sim10 at 40-times coverage.

From: Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data

Type

Number of breakpoints

Sensitivity

 

Total

Detected

 

Insertions

80

76

95%

Deletions

40

38

95%

Inversions

80

78

98%

Intra-chrom. trans.

120

114

95%

Inter-chrom. trans.

120

113

94%

Tandem dup.

40

36

90%

  1. The second column is the number of breakpoints associated with each type of rearrangement. The third column is the number of detected breakpoints corresponding to each type. The last column is the ratio of the third column to the second column. Intra-chrom. trans.: intra-chromosomal translocations, Inter-chrom. trans.: inter-chromosomal translocations, Tandem dup.: tandem duplications.
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BMC Bioinformatics

ISSN: 1471-2105

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