Table 1 Characteristics of ancestral genes and adjacencies from observed ancestral adjacencies filtered by Boltzmann probability (leftmost column), with different kT values.
From: Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach
Ancestral genes | Ancestral adjacencies | Syntenic conflicts | |||||||
|---|---|---|---|---|---|---|---|---|---|
Proba. | kT= 0.5 | kT= 0.1 | kT= 0.01 | kT= 0.5 | kT= 0.1 | kT= 0.01 | kT= 0.5 | kT= 0.1 | kT= 0.01 |
≥ 0.1 | 122,593 | 120,495 | 120,531 | 137,133 | 116,671 | 116,873 | 31,415 | 14,655 | 14,863 |
≥ 0.2 | 121,896 | 119,792 | 119,864 | 130,928 | 113,835 | 114,109 | 26,415 | 12,631 | 12,871 |
≥ 0.3 | 120,869 | 118,871 | 118,913 | 122,073 | 110,472 | 110,676 | 19,729 | 10,259 | 10,471 |
≥ 0.4 | 118,240 | 117,883 | 117,990 | 111,224 | 107,492 | 107,845 | 11,569 | 8,439 | 8,738 |
≥ 0.5 | 113,023 | 116,476 | 116,810 | 100,265 | 103,963 | 105,015 | 5,658 | 6,578 | 7,373 |
≥ 0.6 | 104,970 | 114,699 | 114,902 | 88,943 | 100,064 | 100,511 | 3,044 | 5,081 | 5,387 |
≥ 0.7 | 92,647 | 112,834 | 112,924 | 75,063 | 96,546 | 96,789 | 1,363 | 4,104 | 4,301 |
≥ 0.8 | 75,408 | 110,272 | 110,503 | 58,665 | 92,181 | 92,621 | 492 | 3,290 | 3,496 |
≥ 0.9 | 45,753 | 107,769 | 107,863 | 34,005 | 88,132 | 88,373 | 65 | 2,717 | 2,886 |
= 1 | 13 | 16,470 | 106,903 | 7 | 10,798 | 87,048 | 0 | 0 | 2,690 |