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Table 6 The alignment rate and precision of each alignment method on single-end real data with different read length.

From: Re-alignment of the unmapped reads with base quality score

  Alignment Rate
  SRR006273(76 bp) ERR008838(76 bp) ERR008843(83 bp)
BWA 69.0456 77.1065 81.1342
BWA(mem) 75.3120 80.3020 83.2176
RAUR(BWA) 83.0732 83.8950 86.3092
Bowtie2 70.6717 78.7660 82.3776
Bowtie2(local) 80.6902 85.9375 88.2963
RAUR(Bowtie2) 81.0039 83.8124 86.0461
  1. There are 10,685,743 single-end reads with length 76-bp in SRR006273, 12,564,212 with length 76-bp in ERR008838, and 15,929,373 with length 83-bp in ERR008843.