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Table 6 The alignment rate and precision of each alignment method on single-end real data with different read length.

From: Re-alignment of the unmapped reads with base quality score

 

Alignment Rate

 

SRR006273(76 bp)

ERR008838(76 bp)

ERR008843(83 bp)

BWA

69.0456

77.1065

81.1342

BWA(mem)

75.3120

80.3020

83.2176

RAUR(BWA)

83.0732

83.8950

86.3092

Bowtie2

70.6717

78.7660

82.3776

Bowtie2(local)

80.6902

85.9375

88.2963

RAUR(Bowtie2)

81.0039

83.8124

86.0461

  1. There are 10,685,743 single-end reads with length 76-bp in SRR006273, 12,564,212 with length 76-bp in ERR008838, and 15,929,373 with length 83-bp in ERR008843.
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BMC Bioinformatics

ISSN: 1471-2105

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