From: Homology Induction: the use of machine learning to improve sequence similarity searches
PDB 1MPP Pepsin (Renin). | |
---|---|
HIall | Â |
A protein is homologous if | |
a1 | it has the classification 'eukaryota' and |
 | it has the PROSITE pattern 'PS00141'. |
HIseq | Â |
A protein is homologous if | |
s1 | it has it has a level 10 serine-serine pair content and |
 | it has it has a level 10 glycine-serine pair content and |
 | it has in the 8th decile of predicted β-strands a strand of length level 9 |
or | Â |
s2 | it has a molecular weight of level 7 and |
 | it has in the 9th decile of predicted coils a coil of length level 1 |
or | Â |
s3 | it has it has a level 2 histidine content and |
 | it has in the 7th decile of predicted secondary structures a β-strand of lengthlevel 5 and |
 | it has in the 7th decile of predicted secondary structures a coil of lengthlevel 5 and |
 | it has in the 4th decile of predicted secondary structures a β-strand of length level 6. |