Table 10 The HI rules learnt to identify 1MPP are shown in English translation.
From: Homology Induction: the use of machine learning to improve sequence similarity searches
| PDB 1MPP Pepsin (Renin). | |
|---|---|
| HIall | |
| A protein is homologous if | |
| a1 | it has the classification 'eukaryota' and |
| it has the PROSITE pattern 'PS00141'. | |
| HIseq | |
| A protein is homologous if | |
| s1 | it has it has a level 10 serine-serine pair content and |
| it has it has a level 10 glycine-serine pair content and | |
| it has in the 8th decile of predicted β-strands a strand of length level 9 | |
| or | |
| s2 | it has a molecular weight of level 7 and |
| it has in the 9th decile of predicted coils a coil of length level 1 | |
| or | |
| s3 | it has it has a level 2 histidine content and |
| it has in the 7th decile of predicted secondary structures a β-strand of lengthlevel 5 and | |
| it has in the 7th decile of predicted secondary structures a coil of lengthlevel 5 and | |
| it has in the 4th decile of predicted secondary structures a β-strand of length level 6. | |