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Table 10 The HI rules learnt to identify 1MPP are shown in English translation.

From: Homology Induction: the use of machine learning to improve sequence similarity searches

PDB 1MPP Pepsin (Renin).

HIall

 

A protein is homologous if

a1

it has the classification 'eukaryota' and

 

it has the PROSITE pattern 'PS00141'.

HIseq

 

A protein is homologous if

s1

it has it has a level 10 serine-serine pair content and

 

it has it has a level 10 glycine-serine pair content and

 

it has in the 8th decile of predicted β-strands a strand of length level 9

or

 

s2

it has a molecular weight of level 7 and

 

it has in the 9th decile of predicted coils a coil of length level 1

or

 

s3

it has it has a level 2 histidine content and

 

it has in the 7th decile of predicted secondary structures a β-strand of lengthlevel 5 and

 

it has in the 7th decile of predicted secondary structures a coil of lengthlevel 5 and

 

it has in the 4th decile of predicted secondary structures a β-strand of length level 6.