Table 4 RDBMS Fields and Short Descriptions.
# | Search Query | Output Field | Description |
|---|---|---|---|
1 | ---- | Row# | Index for ease of usage. |
2 | Organism | Organism | Organism: Complete organism name (in Genus species format; organisms are listed using the NCBI scientific name). |
3 | Cell Location | L | Cell Location: Chloroplast (C), Cyanelle (Y), Mitochondrion (M), Nucleus (N), or Virus (V). |
4 | RNA Type | RT | RNA Type: rRNA (R) or Intron (I). (mRNA, tRNA, SnRNA, and Other are presently unsupported.) |
5 | RNA Class | RC | RNA Class: Detailed classification within RNA Types. |
6 | Exon | EX | Exon sequence containing the intron. The expanded names for the exon abbreviations are available online. |
7 | ---- | IN | Intron Number: For exon sequences containing multiple introns, the introns are numbered sequentially. |
8 | Intron Position | IP | Intron Position: Nucleotide (E. coli reference numbering) immediately prior to the intron insertion point. |
9 | ORF | 0 | Open Reading Frame presence within intron sequences. Y = an ORF of at least 500 nucleotides is present; N = no ORF of at least 500 nucleotides is present; U = ORF presence/absence was not determined; see also online discussion about ORFs. The ORF identity is sometimes given in the Comment field. |
10 | Sequence Length | Size | Number of nucleotides in the RNA sequence. |
11 | ---- | Cmp | Percent Completeness: estimated completeness of the sequence. Only sequences that are at least 90% complete are included here. |
12 | Accession Number | AccNum | GenBank Accession Number. Links directly to the GenBank entry at the NCBI web site. |
13 | Secondary Structures | StrDiags | Structure Diagrams: Links to secondary structure diagrams available from the CRW Site. Users may select sequences with or without structures or all sequences. |
14 | Common Name | Common Name | From the NCBI Phylogeny, where available. |
15 | Group ID | Gr.Id | (Partially implemented feature.) |
16 | Group Class | Gr.Class | (Feature not presently implemented.) |
17 | Comment | Comment | Additional information about a sequence. |
18 | Phylogeny | Phylogeny | NCBI Phylogeny for the Organism. The first level is shown; the remainder is available by following the "m" ("more") link. |
19 | ---- | Row# | Index for ease of usage. |