Table 5 Novel sequences validated by BLAT search against theworking draft of the human genome at UCSC (only first page is shown, please go to Additional Files, File 1 to see the full table)
From: Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs
BLAST/BLAT query Acc | BAC-/Genomic-/mRNA-clone | Hypothetical Protein mRNA (1) | Gene Prediction | BLAT 1st Identity | BLAT 1st Chr.Hit | Average value of Avg Diff | Std. Dev. | % P or M 33 arrays |
|---|---|---|---|---|---|---|---|---|
F15766 | AL158039.5 | NM_032728.1 | A, E, F, G | 97.8% | 9q34.2 | 757 | 239 | 97.0% |
F15804 | AC002351.1 | G | 98.6% | 12q24.11 | 1570 | 843 | 93.9% | |
F15913 | AL357374.11 | A, E, F, G | 99.7% | 20q11.22 | 1611 | 623 | 100.0% | |
F15967 | AC008763.7 | (XM_058961.1) | A, E, F, G | 98.2% | 19p13.3 | 1125 | 285 | 100.0% |
F16039 | AP000348.1 | (XM_059329.1 | A, E, F, G | 99.7% | 22q11.23 | 6950 | 3513 | 100.0% |
F16253 | AC022307.14 | NM_018045.1 | A, F, G | 99.1% | 1p35.1 | 330 | 217 | 84.8% |
F16384 | AC096677.2 | A | 99.2% | 1q32.3 | 1352 | 725 | 87.9% | |
F16396 | AC092664.2 | A | 99.7% | 2q13 | 2412 | 685 | 100.0% | |
F16592 | AC023415.3 | 100.0% | 13q31.2 | 882 | 614 | 100.0% | ||
F16715 | AL031727.42 | (XM_059093.1) | A | 99.5% | 1p36.13 | 2653 | 532 | 100.0% |
F16733 | AC092069.2 | A, E, F, G | 98.6% | 19p13.2 | 549 | 139 | 97.0% | |
F16774 | AC092636.3 | A | 100.0% | 2q11.2 | 2061 | 1554 | 100.0% | |
F16938 | AC021165.4 | F, G | 99.0% | 19p13.3 | 1722 | 422 | 90.9% | |
F16970 | AC068700.5 | A | 100.0% | 8q21.13 | 333 | 195 | 90.9% | |
F17157 | AL512652.18 | A | 98.1% | 13q12.11 | 538 | 297 | 87.9% | |
F17214 | BC015836 | A | 100.0% | 3q25.2 | 4572 | 2296 | 100.0% | |
F17216 | AP000512.1 | G | 98.2% | 6p21.33 | 473 | 120 | 97.0% | |
F17258 | AC005568.1 | A | 97.7% | 16p13.3 | 2515 | 553 | 100.0% | |
F17715 | AL353689.18 | NM_020247.1 | A, E, F | 99.3% | 1q42.13 | 2744 | 1124 | 100.0% |
F17797 | AC013603.14 | NM_024025.1 | A, E, F | 96.1% | 8p12 | 1236 | 635 | 100.0% |
F18177 | AC004643.1 | NM_017885.1 | A, E, F | 99.5% | 16p13.3 | 2164 | 900 | 100.0% |
F18188 | Z63603.1 | A | 99.1% | 12q24.31 | 618 | 322 | 100.0% | |
F18468 | AL138796.6 | A, E | 99.3% | 1q21.1 | 8300 | 1981 | 100.0% | |
F18648 | AC004985.2 | (NM_032014.1) | A, E, F, G | 100.0% | 7p13 | 2018 | 577 | 100.0% |
F18791 | AL359079.15 | NM_017698.1 | A, F | 99.8% | Xq23 | 598 | 194 | 78.8% |
F18796 | AC010271.7 | A | 98.6% | 19q13.13 | 308 | 175 | 81.8% | |
F18838 | AC011380.5 | NM_032412.1 | A | 100.0% | 5q31.3 | 1410 | 550 | 100.0% |
F18952 | AC027674.9 | A | 99.2% | 10q11.22 | 1207 | 357 | 97.0% | |
F19033 | AP003419.1 | (XM_040083.1) | A, E | 100.0% | 11q13.2 | 662 | 148 | 97.0% |
F19110 | AC079814.9 | G | 99.0% | 3p21.31 | 14508 | 4317 | 100.0% | |
F19200 | AB020863.1 | A | 100.0% | 8p22 | 817 | 378 | 84.8% | |
F19351 | AL590128.2 | (AY037153.1) | A, E | 99.7% | 1p36.31 | 2326 | 1581 | 75.8% |
F20210 | AL137281.1 | A, G | 98.1% | 11q21 | 1641 | 913 | 100.0% | |
F20217 | AC007687.16 | A | 100.0% | 3q26.33 | 1009 | 774 | 93.9% | |
F20427 | AP000803.2 | A | 100.0% | 11q13.1 | 1022 | 367 | 75.8% | |
F20554 | AL591408.3 | NM_032747.1 | E, F | 99.1% | 10q24.33 | 1770 | 442 | 100.0% |
F20576 | AC007225.2 | A | 99.8% | 16q11.2 | 48 | 52 | 39.4% | |
F20639 | AC004230.1 | A | 100.0% | 11q11 | 3225 | 1134 | 100.0% | |
F20736 | AC027674.9 | A | 100.0% | 10q11.22 | 372 | 159 | 97.0% |