Skip to main content

Table 3 The ORFs in the set S(GATGAG) with their expression profiles.

From: Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

ORF gene timepoints
   1 2 3 4 5 6 7
YBL054W   0.21 -0.01 -0.18 -1.56 -1.25 -0.79 -1.47
YCL059C KRR1 0.36 0.06 0.45 -0.69 -0.71 -0.34 -1.69
YDL063C   -0.03 -0.03 -0.27 -0.92 -1.06 -1.51 -2.06
YDL153C SAS10 0.41 0.19 0.36 -0.76 -0.97 -1.43 -1.79
YDR365C   0.03 0.06 0.21 -0.38 -0.62 -1.64 -1.94
YGR022C   -0.17 -0.06 0.14 0.04 -0.15 0.54 0.86
YGR102C   -0.23 -0.23 -0.07 -0.32 0.03 1.43 0.84
YGR103W NOP7 0.15 -0.06 0.32 -0.92 -1.09 -1.64 -2.56
YGR128C   0.30 0.26 0.38 -0.81 -0.76 -0.89 -1.47
YGR129W SYF2 -0.18 -0.54 0.11 -0.12 -0.23 0.74 0.14
YGR145W   0.00 -0.23 0.25 -0.92 -1.09 -1.69 -2.18
YJL033W HCA4 -0.06 0.01 0.21 -0.94 -0.36 -0.67 -0.62
YKL078W   -0.04 -0.01 0.04 -1.12 -0.97 -0.71 -1.89
YKL172W EBP2 0.12 0.21 0.30 -0.74 -0.56 -0.42 -1.40
YLR276C DBP9 0.03 0.14 0.32 -0.62 -0.86 -0.67 -1.64
YLR401C   -0.06 -0.07 0.07 -0.71 -0.71 -0.84 -1.03
YLR402W   -0.18 -0.23 -0.30 -0.47 -0.51 -0.20 -0.27
YML123C PHO84 0.50 0.50 0.54 -0.56 -0.67 -2.32 -1.69
YNL061W NOP2 -0.03 -0.51 -0.42 -1.29 -1.36 -2.25 0.01
YNL062C GCD10 -0.10 0.00 0.01 -0.47 -0.64 -1.12 -1.06
YOL141W PPM2 -0.10 0.01 0.24 -0.84 -0.54 0.04 -0.20
YPL068C   -0.60 -0.10 -0.18 -0.84 -1.09 0.08 -0.89
YPR112C MRD1 -0.17 -0.23 -0.17 -0.54 -0.62 -1.12 -1.51
YPR113W PIS1 -0.04 0.00 0.62 0.52 0.56 1.12 -1.03
set average 0.005 -0.036 0.124 -0.666 -0.676 -0.679 -1.106
genome average -0.089 -0.038 0.113 -0.196 -0.242 0.092 -0.203
significance 1.83 0.03 0.17 -6.71 -5.47 -4.60 -4.98