Figure 1
From: MatGAT: An application that generates similarity/identity matrices using protein or DNA sequences
Screen shot of the data input screen of MatGAT v2.0. Protein or DNA sequences in the FASTA format can be entered by hand into the data box, uploaded from a text file, or pasted into place. Several scoring matrices are available for analyses: BLOSUM50, BLOSUM62, and PAM250. Additionally, "First Gap" and "Gap Extension" conditions may be altered for optimal alignment. The "Clear" button will delete the input sequence data and alignments, while leaving the matrix output unaffected until new data are analyzed.