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Table 2 Male-Female differentially expressed genes.

From: Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

Probe Set

GenBank

Name

Gene

Chromosome

Function

a9 M/F

a47 M/F

RMA_Log2

RMA_Log2

Sybr-PCR

Genes identified in both brain areas.

      

FC

  

M/F FC

201909_

BC010286

ribosomal protein S4, Y-linked

RPS4Y

Yp11.3

protein biosynthesis

8.9

10.8

2.42E-14

7.67E-11

>1700

204409_s_

BC005248

eukaryotic translation initiation factor 1A

EIF1AY

Yq11.2

translation initiation

1.9

2.3

<1E-16

9.77E-13

>72

204410_

AF000987

eukaryotic translation initiation factor 1A

EIF1AY

Yq11.2

translation initiation

1.6

1.7

4.09E-06

1.84E-09

>72

205000_

AF000984

DEAD/H (Asp-Glu-Ala-Asp/His)box

DBY

Yq11

RNA helicase

6.4

8.5

<1E-16

<1E-16

>96000

205001_s_

AF000985

DEAD/H (Asp-Glu-Ala-Asp/His)box

DBY

Yq11

RNA helicase

1.9

1.9

<1E-16

5.51E-07

>96000

206624_

Y13618

ubiquitin specific protease 9

USP9Y

Yq11.2

deubiquitylation

4.7

5.1

<1E-16

<1E-16

 

206700_s_

U52191

SMC (mouse) homolog

SMCY

Yq11

transcription factor

2.9

3.3

1.70E-07

6.48E-10

>5000

207063_

AF119903

hypothetical protein PRO2834

 

Yq11.2

unknown

1.3

1.5

4.17E-06

5.77E-10

 

207246_

M30607

zinc finger protein

ZFY

Yp11.3

transcription regulation

1.3

1.2

4.67E-08

8.57E-06

 

214983_

AL080135

hypothetical protein DFKZp434I143

 

Y

unknown

1.9

2.1

6.13E-08

9.60E-08

>100,000

207703_

AB023168

KIAA0951 protein

 

Xp22.3

unknown

2.5

2.7

2.25E-08

6.97E-07

 

214218_s_

AV699347

XIST

XIST

Xq13.2

X-gene inactivation

-6.4

-7.8

1.32E-07

4.23E-10

<-3400

221728_x_

AK025198

XIST

XIST

Xq13.2

X-gene inactivation

-12

-15

1.70E-08

4.49E-09

<-3400

Selected genes identified in BA9 or BA47 only.

      

FC

   

211149_

AF000994

ubiquitously transcribed tetratricopeptide rep

UTY

Yq11

protein-protein interaction

1.1

1.2

0.0148

8.35E-07

>67,000

210292_s_

AF332218

protocadherin 11 X-linked

PCDH11X

Xq21.3

cell-cell recognition

1.5

1.8

0.0012

1.30E-08

 

211937_

NM_001417

eukaryotic translation initiation factor 4B

EIF4B

12q12

translation regulation

1.2

1.1

1.21E-05

0.0916

 

219737_s_

AI524125

protocadherin 9

PCDH9

13q

cell-cell recognition

1.3

1.0

2.77E-05

0.4902

 
  1. Bold denotes p-values that passed the Benjamini-Hochberg false discovery rate screen. M/F FC, male versus female fold change (see Methods); Sybr-PCR, real-time PCR.
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BMC Bioinformatics

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