Figure 7
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
Summary of the measures used to evaluate alignment quality that are discussed in this paper. "Independent Measures" are those that do not compare an alignment to a reference alignment, but compare the superimposed structures implied by an alignment. "Dependent Measures" compare an alignment to a reference alignment. The Graphical Display Tools highlight differences in alignment between the reference alignment and a test alignment. An example output is shown in Figure: 8. For definitions of terms used in this Figure, see Results.