Table 2 Example calculation of Position Shift Error (PSE). See Equation: 4 and associated text for explanation.
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
a) Reference Alignment | |||||||
|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 3.5 | 4 | 5 | 6 | 7 |
G | K | L | - | M | R | A | Y |
G | K | P | H | K | L | R | L |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
b) Test Alignment | |||||||
1 | 2 | 3 | 4 | 4.5 | 5 | 6 | 7 |
G | K | L | M | - | R | A | Y |
G | K | P | H | K | L | R | L |
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |