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Table 1 Test of different contact definitions on the dataset

From: Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

Cutoff (Å)

All atoms

SC+CA

BB

CB

CA

0.4

2.15

5.53

0.05

-

-

0.5

2.14

7.08

0.10

-

-

0.6

2.21

7.33

0.22

0.03

-

0.7

2.28

6.85

0.49

0.03

-

0.8

2.36

6.31

1.03

0.03

-0.02

0.9

2.43

5.82

1.52

0.03

-0.05

1.0

2.49

5.44

1.63

0.05

-0.07

1.1

2.56

5.16

1.59

0.08

-0.06

1.2

2.59

4.93

1.53

0.12

-0.05

1.3

2.61

4.76

1.49

0.15

-0.04

1.4

2.61

4.63

1.46

0.21

-0.03

1.6

-

-

-

0.37

0.07

1.8

-

-

-

0.72

0.08

2.0

-

-

-

1.50

0.14

2.2

-

-

-

3.07

0.62

2.4

-

-

-

4.18

1.53

2.6

-

-

-

4.09

1.95

2.8

-

-

-

3.74

1.80

  1. The average z-score (see Materials and methods section) for different contact definitions is reported versus the cutoff employed.
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BMC Bioinformatics

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