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Table 1 Test of different contact definitions on the dataset

From: Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

Cutoff (Å) All atoms SC+CA BB CB CA
0.4 2.15 5.53 0.05 - -
0.5 2.14 7.08 0.10 - -
0.6 2.21 7.33 0.22 0.03 -
0.7 2.28 6.85 0.49 0.03 -
0.8 2.36 6.31 1.03 0.03 -0.02
0.9 2.43 5.82 1.52 0.03 -0.05
1.0 2.49 5.44 1.63 0.05 -0.07
1.1 2.56 5.16 1.59 0.08 -0.06
1.2 2.59 4.93 1.53 0.12 -0.05
1.3 2.61 4.76 1.49 0.15 -0.04
1.4 2.61 4.63 1.46 0.21 -0.03
1.6 - - - 0.37 0.07
1.8 - - - 0.72 0.08
2.0 - - - 1.50 0.14
2.2 - - - 3.07 0.62
2.4 - - - 4.18 1.53
2.6 - - - 4.09 1.95
2.8 - - - 3.74 1.80
  1. The average z-score (see Materials and methods section) for different contact definitions is reported versus the cutoff employed.