From: Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
Lowest | Highest | Mean | SD | CV (%) | |
---|---|---|---|---|---|
Total signal | 832,561.4 | 3,161,392.7 | 2,039,655.7 | 526,295.0 | 25.80% |
Sum of signals used for SF | 524,513.7 | 1,986,236.9 | 1,212,296.5 | 336,138.0 | 27.73% |
Trimmed total | 308,047.7 | 1,240,257.3 | 827,359.1 | 215,325.1 | 26.03% |
Mean signal | 94.6 | 359.3 | 231.0 | 59.8 | 25.80% |
Median of signals | 17.8 | 54.8 | 35.7 | 8.7 | 24.41% |
Mean of log signals | 4.3 | 5.8 | 5.1 | 0.4 | 7.17% |
Trimmed percentage | 34.4 | 54.1 | 40.7 | 4.4 | 10.70% |