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Table 1 Evaluation of the method IdentiCS for identification of CDSs in the genome of Salmonella typhimurium. KEGG: KEGG genome database; SW: SWISS-PROT + TrEMBL + TrEMBL updates.

From: IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Database KEGG SW
True positive 4121 4339
False positive 907 987
False negative 328 110
Sensitivity %* 92.6 (91.1) 97.7 (98.2)
Specificity %* 82.0 (94.9) 81.5 (87.2)
Inconsistence rate (%) in TP 0.35 0.64
  1. *: Values shown in parentheses are calculated based on the nucleotide level according to Burset and Guigo[32]