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Table 1 Evaluation of the method IdentiCS for identification of CDSs in the genome of Salmonella typhimurium. KEGG: KEGG genome database; SW: SWISS-PROT + TrEMBL + TrEMBL updates.

From: IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Database

KEGG

SW

True positive

4121

4339

False positive

907

987

False negative

328

110

Sensitivity %*

92.6 (91.1)

97.7 (98.2)

Specificity %*

82.0 (94.9)

81.5 (87.2)

Inconsistence rate (%) in TP

0.35

0.64

  1. *: Values shown in parentheses are calculated based on the nucleotide level according to Burset and Guigo[32]
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BMC Bioinformatics

ISSN: 1471-2105

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