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Table 4 Comparison of EC numbers identified with different methods and different versions of the genome sequence of Klebsiella pneumoniae. WIT: WIT version of annotation by gene prediction from the 3.9-fold genome sequences; KEGG3.9 and KEGG7.9: annotations of the 3.9-fold and 7.9-fold genome sequences by applying the KEGG genome database. SW3.9 and SW7.9: annotations of the 3.9-fold and 7.9-fold genome sequences by applying SWISS-PROT and TrEMBL protein databases.

From: IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Annotation version Number of unique ECs identified Version-specific EC numbers* compared to:
   WIT KEGG3.9 KEGG7.9 SW3.9 SW7.9
WIT 764 - 162 159 152 131
KEGG3.9 646 44 - 4 63 56
KEGG7.9 653 48 11 - 68 57
SW3.9 693 81 110 108 - 15
SW7.9 735 102 145 139 57 -
  1. *The version-X-specific EC number compared to the version Y is referred to EC numbers that are only found in the annotation Version X but not in Y. For example, the KEGG3.9 has only 4 version-specific EC numbers compared to KEGG7.9. On the other side, KEGG7.9 has 11 version-specific EC numbers compared to KEGG3.9.