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Table 1 Bernouilli Model Hit probability of seeds on Bernoulli sequences of length 64 with match probability 0.7 and transition/transversion probabilities 0.15

From: Improved hit criteria for DNA local alignment

weight spaced seed hit proba transition-constrained seed hit proba
9 B9 = ##_##_#_#___### 0.7291 B9tr= ##@_#@#__#_### 0.7366
10 B10 = ##_##___##_#_### 0.5957 B10tr= #@#_#_@#_@#__@### 0.6056
11 B11 = ###_#__#_#__##_### 0.4671 B11tr= #@#_#@__##_#_@@## 0.4784