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Figure 6 | BMC Bioinformatics

Figure 6

From: Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model

Figure 6

CHAIN analysis of the D1 AAA+ module of p97 ATPases. See legends to Figs 4 and 5 for descriptions and text for discussion. (A) Motif-based contrast hierarchical alignment. The bars directly below the aligned sequences indicate motif regions; wide bars indicate residues shown in Fig. 7 and discussed in the text. (B) PSI-BLAST generated contrast hierarchical alignment.

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BMC Bioinformatics

ISSN: 1471-2105

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