Table 1 List of superfamilies used for FMALIGN benchmarking.
From: Improvement of alignment accuracy utilizing sequentially conserved motifs
Superfamily code | Superfamily name | Structural Class | Average length of proteins | Average sequence identity(%) |
|---|---|---|---|---|
02.01.001 | Globin-like | All α | 142 | 15.2 |
02.01.023 | Putative DNA-binding domain | All α | 76 | 10.0 |
02.01.050 | Cytochromes | All α | 122 | 22.0 |
02.01.060 | ACP-like | All α | 80 | 23.5 |
02.01.101 | SAM/Pointed domain | All α | 84 | 13.3 |
02.02.027 | C2 domain(Calcium/lipid-binding domain, CaLB) | All β | 75 | 11.4 |
02.02.042 | Galactose-binding domain-like | All β | 185 | 12.6 |
02.02.058 | ISP domain | All β | 136 | 23.4 |
02.02.094 | Acid proteases | All β | 217 | 20.4 |
02.02.152 | Hedgehog/intein (Hint) domain | All β | 177 | 16.9 |
02.03.018 | Phosphatidylinositol-specific phospholipase C (PI-PLC) | α and β | 286 | 13.6 |
02.03.059 | Ferredoxin reductase-like, C-terminal NADP-linked domain | α and β | 132 | 21.6 |
02.03.073 | Thiamin diphosphate-binding fold (THDP-binding) | α and β | 236 | 12.1 |
02.03.148 | "Helical backbone" metal receptor | α and β | 320 | 14.4 |
02.04.010 | Chromo domain-like | α and β | 68 | 26.3 |
02.04.088 | Regulatory domain in the amino acid metabolism | α and β | 90 | 12.2 |
02.04.218 | Ribosome inactivating proteins (RIP) | α and β | 253 | 22.1 |
02.07.017 | Leech antihemostatic proteins | α and β | 47 | 19.1 |