Table 2 Performance evaluation results (ROC50). Our test set is composed of 456 families that have at least 2 related families within the same superfamily (see section 'Data sets'). For each method, we report the number of true relationships that are detected until 50 false connections occur. We repeat this analysis four times, each time with a different definition of a false positive. A break up of the relationships by relationship-type is given in Table 3 for the first type of false positive.

From: Protein family comparison using statistical models and predicted structural information