Table 5 D (h, 
) for smaller samples. Measure of discrepancy between phase-known and phase-unknown frequency predictions for smaller samples randomly selected from larger data sets.
) for smaller samples. Measure of discrepancy between phase-known and phase-unknown frequency predictions for smaller samples randomly selected from larger data sets.From: Haplotype frequency estimation error analysis in the presence of missing genotype data
Data set | # individuals | % missing alleles | D (h, | % increase from complete data |
|---|---|---|---|---|
7 loci SNP | 300 | 0 | 0.049354 | 0 |
7 loci SNP | 300 | 10 | 0.067410 | 37 |
7 loci SNP | 100 | 0 | 0.104105 | 0 |
7 loci SNP | 100 | 10 | 0.147034 | 41 |
7 loci SNP | 50 | 0 | 0.155912 | 0 |
7 loci SNP | 50 | 10 | 0.229097 | 47 |
multiallelic | 300 | 0 | 0.153865 | 0 |
multiallelic | 300 | 10 | 0.202678 | 32 |
multiallelic | 100 | 0 | 0.227170 | 0 |
multiallelic | 100 | 10 | 0.238658 | 5 |
multiallelic | 50 | 0 | 0.320917 | 0 |
multiallelic | 50 | 10 | 0.372827 | 16 |