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Table 2 Correspondence of external biological keywords and ProtoNet clusters after and before compression.

From: A functional hierarchical organization of the protein sequence space

External Source ProtoNet Mean CS (before compression)a Random Mean CS (before compression)
InterPro all 0.808 (0.835) 0.025 (0.026)
GO molecular function 0.558 (0.588) 0.020 (0.024)
SCOP family 0.702 (0.720) 0.124 (0.299)
SCOP superfamily 0.635 (0.654) 0.116 (0.260)
SCOP fold 0.580 (0.598) 0.107 (0.230)
ENZYME entry 0.643 (0.848) 0.090 (0.179)
ENZYME sub-subclass 0.471 (0.517) 0.036 (0.053)
ENZYME subclass 0.371 (0.412) 0.018 (0.025)
  1. aCS – correspondence score, see text for definition.