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Table 4 SIGI's performance in predicting the donor genome for synthetic genes modelling the amelioration process.

From: SIGI: score-based identification of genomic islands

Acceptor Cut-off AMELI Donor
   I II III IV V VI VII VIII
Mesorhizobium loti 0.05 0.50 7/2 0.50 69/1 0.50 34/11 0.50 26/1 0.50 115/0 0.10 1/2 0.50 54/89 0.50 51/52
  0.10 0.75 286/16 0.75 329/3 0.50 82/17 0.50 298/7 0.50 360/7 0.50 399/6 0.50 154/251 0.50 193/265
  0.25 0.75 360/23 0.75 359/3 0.50 90/20 0.95 485/8 0.25 58/8 0.50 482/7 0.50 161/259 0.50 207/277
   0.95 476/13 0.95 486/2 0.95 489/7 0.95 485/8 0.95 497/1 0.95 499/0 0.95 499/0 0.95 302/198
Escherichia coli K-12 0.05 1.00 32/6 0.50 38/0 0.50 69/1 0.95 10/2 0.75 73/1 0.90 88/3 0.75 45/3 0.75 133/7
  0.10 0.95 349/39 0.75 455/1 0.75 454/8 0.50 392/6 1.00 444/4 0.90 455/6 0.50 433/21 0.75 446/27
  0.25 1.00 378/69 0.75 484/1 0.75 490/8 0.50 471/8 1.00 496/4 0.90 492/8 0.50 473/27 0.75 469/31
   0.95 386/44 0.95 499/0 0.95 497/2 0.95 497/2 0.95 498/2 0.95 495/5 0.95 499/1 0.95 499/1
Pyrococcus horikoshii 0.05 0.75 134/1 0.50 1/0 0.75 5/0 0.50 8/0 0.75 98/2 0.75 58/1 0.50 23/11 0.90 303/84
  0.10 0.75 389/1 0.95 358/2 0.75 137/0 0.50 120/1 0.75 455/8 0.75 440/5 0.50 258/153 0.90 381/110
  0.25 0.75 411/1 0.95 466/2 0.50 23/0 0.50 177/1 0.75 484/9 0.75 494/6 0.50 324/176 0.90 388/112
   0.95 498/0   0.95 428/0 0.95 500/0 0.95 494/6 0.95 496/4 0.95 476/26 0.95 460/40
Clostridium acetobutylicum 0.05 1.00 20/7 0.50 5/1 0.75 134/42 0.50 46/37 0.75 157/6 0.50 50/32 0.25 60/20 0.75 121/242
  0.10 1.00 60/39 0.00 4/2 0.75 335/137 0.50 309/148 0.75 452/19 0.50 299/167 0.25 312/151 0.75 181/306
  0.25 1.00 79/44 0.00 7/2 0.75 354/146 0.50 338/162 0.50 472/23 0.25 378/122 0.25 339/161 0.75 188/312
   0.95 66/35 0.95 155/0 0.95 405/95 0.95 495/5 0.95 494/6 0.95 496/4 0.95 470/30 0.95 405/95
  1. For each pair of donor and acceptor, the worst case is given for three values of AMELI. Each entry lists the fraction FRAC and the number of correct/incorrect prediction generated for a dataset consisting of 500 sequences. The last line gives the number of correct/incorrect predictions for a FRAC value of 0.95.