|
Acceptor
|
Cut-off AMELI
|
Donor
|
|---|
| | |
I
|
II
|
III
|
IV
|
V
|
VI
|
VII
|
VIII
|
|
Mesorhizobium loti
|
0.05
|
0.50 7/2
|
0.50 69/1
|
0.50 34/11
|
0.50 26/1
|
0.50 115/0
|
0.10 1/2
|
0.50 54/89
|
0.50 51/52
|
| |
0.10
|
0.75 286/16
|
0.75 329/3
|
0.50 82/17
|
0.50 298/7
|
0.50 360/7
|
0.50 399/6
|
0.50 154/251
|
0.50 193/265
|
| |
0.25
|
0.75 360/23
|
0.75 359/3
|
0.50 90/20
|
0.95 485/8
|
0.25 58/8
|
0.50 482/7
|
0.50 161/259
|
0.50 207/277
|
| | |
0.95 476/13
|
0.95 486/2
|
0.95 489/7
|
0.95 485/8
|
0.95 497/1
|
0.95 499/0
|
0.95 499/0
|
0.95 302/198
|
|
Escherichia coli K-12
|
0.05
|
1.00 32/6
|
0.50 38/0
|
0.50 69/1
|
0.95 10/2
|
0.75 73/1
|
0.90 88/3
|
0.75 45/3
|
0.75 133/7
|
| |
0.10
|
0.95 349/39
|
0.75 455/1
|
0.75 454/8
|
0.50 392/6
|
1.00 444/4
|
0.90 455/6
|
0.50 433/21
|
0.75 446/27
|
| |
0.25
|
1.00 378/69
|
0.75 484/1
|
0.75 490/8
|
0.50 471/8
|
1.00 496/4
|
0.90 492/8
|
0.50 473/27
|
0.75 469/31
|
| | |
0.95 386/44
|
0.95 499/0
|
0.95 497/2
|
0.95 497/2
|
0.95 498/2
|
0.95 495/5
|
0.95 499/1
|
0.95 499/1
|
|
Pyrococcus horikoshii
|
0.05
|
0.75 134/1
|
0.50 1/0
|
0.75 5/0
|
0.50 8/0
|
0.75 98/2
|
0.75 58/1
|
0.50 23/11
|
0.90 303/84
|
| |
0.10
|
0.75 389/1
|
0.95 358/2
|
0.75 137/0
|
0.50 120/1
|
0.75 455/8
|
0.75 440/5
|
0.50 258/153
|
0.90 381/110
|
| |
0.25
|
0.75 411/1
|
0.95 466/2
|
0.50 23/0
|
0.50 177/1
|
0.75 484/9
|
0.75 494/6
|
0.50 324/176
|
0.90 388/112
|
| | |
0.95 498/0
| |
0.95 428/0
|
0.95 500/0
|
0.95 494/6
|
0.95 496/4
|
0.95 476/26
|
0.95 460/40
|
|
Clostridium acetobutylicum
|
0.05
|
1.00 20/7
|
0.50 5/1
|
0.75 134/42
|
0.50 46/37
|
0.75 157/6
|
0.50 50/32
|
0.25 60/20
|
0.75 121/242
|
| |
0.10
|
1.00 60/39
|
0.00 4/2
|
0.75 335/137
|
0.50 309/148
|
0.75 452/19
|
0.50 299/167
|
0.25 312/151
|
0.75 181/306
|
| |
0.25
|
1.00 79/44
|
0.00 7/2
|
0.75 354/146
|
0.50 338/162
|
0.50 472/23
|
0.25 378/122
|
0.25 339/161
|
0.75 188/312
|
| | |
0.95 66/35
|
0.95 155/0
|
0.95 405/95
|
0.95 495/5
|
0.95 494/6
|
0.95 496/4
|
0.95 470/30
|
0.95 405/95
|
- For each pair of donor and acceptor, the worst case is given for three values of AMELI. Each entry lists the fraction FRAC and the number of correct/incorrect prediction generated for a dataset consisting of 500 sequences. The last line gives the number of correct/incorrect predictions for a FRAC value of 0.95.
