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Table 1 The non-redundant data set of outer membrane proteins used in this study.

From: A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins

Protein name Number of β-strands PDB code[29] Organism
OmpA 8 1QJP Escherichia coli
OmpX 8 1QJ8 Escherichia coli
OmpT 10 1I78 Escherichia coli
OpcA 10 1K24 Neisseria Meningitidis
OmpLA 12 1QD5 Escherichia coli
Omp32 16 1E54 Comamonas Acidovorans
OmpF 16 2OMF Escherichia coli
Porin 16 2POR Rhodobacter capsulatus
Porin 16 1PRN Rhodobacter blasticus
Sucrose porin 18 1A0S Salmonella typhimurium
Maltoporin 18 2MPR Salmonella typhimurium
FepA 22 1FEP Escherichia coli
FhuA 22 2FCP Escherichia coli
FecA 22 1KMO Escherichia coli