Skip to main content

Advertisement

Table 2 Grouping of obtained functional classes

From: Selection of informative clusters from hierarchical cluster tree with gene classes

Colour in figures Functional group (MIPS) Member clusters from table 1 Functional group (SGD/GO) Member clusters from additional file 1.
Blue cytoplasmic ribosome proteins 1, 8, 12, 19, 40 cytoplasmic ribosomes 1, 11, 19, 27, 30
Red respiration 2 energy (mitochondria) 8, 14, 15
  AA metabolism 4, 5 AA metabolism 7, 9
Red mitochondria 3, 6, 14, 24, 38, 47 mitochondrial ribosomes 4, 6 22, 41
Blue rRNA 7,28   
Blue    ribosome biogenesis 2, 3, 5
Blue translation 36 translation 44
Green nucleosomal complex 9 nucleosome 16
  proteasome 10, 21 proteasome 13, 28, 39
Green nucleotide metabolism 13, 45 nucleotide metabolism 25
Green cell differentiation, pher. resp. 15, 16, 26 mating response (shmoo tip) 49
  phosphate metabolism 17 acid phosphatase/vacuole 50
  lipid metabolism 18, 39 phospholipid metabolism 35, 37
    steroid metabolism 12
Green cell cycle 20 cell cycle 18, 21
Blue tRNA 22 tRNA ligase 33
Green    nucleus/RNA and nucleotide processing 10
Green nucleus 23   
Red CH metabolism, energy 11, 27, 29, 33, 50 energy (CH metabolism) 17, 31, 46, 47
  nitrogen and sulfur metabolism 30 sulfur metabolism 20, 34
    nitrogen starvation 36
    vitamin metabolism 38, 42, 48
  unclassified 31 unknown 40
Red CH. transport 25, 33 CH transport 43
Blue mRNA processing 34   
Red cation transport and homeostasis 35, 37, 42 kation transport 24, 26, 29, 32
  cytoplasm 41   
  AA degradation (/cell wall) 43, 44   
  ER 46, 49 ER 23
  cytoskeleton 48   
  1. Different functional class groups obtained with both MIPS and SGD classification using the first 50 clusters. Groups are rough approximate categorizations giving an overview of what functional classes were obtained showing the ordinal numbers for the member clusters. The matching groups for MIPS and SGD classifications are shown on the same line and similar groups are placed to near by rows. The first column shows the colour of the clusters in cluster tree visualizations when it is not black. New abbreviation is ER, endoplasmic reticulum. Other abbreviations are explained in the text for table 1. Functional grouping is based mainly on table 4 [see additional file 1].