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Table 2 Group analysis of gene expression in potassium-starved A. thaliana roots. This experiment used a custom-made transporter array and corresponding annotations [13]. The PC-values, number of group members and of significantly changed genes are indicated. Only groups with a group-wise FDR <10% are shown. The last column indicates the number of group members that were detected by Significance Analysis of Microarrays [14] with a FDR <10%.

From: Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments

Group

PC-value

Group members

Changed members

SAM

Potassium transporter (up)

1.26E-05

13

7

2

Nitrate transporter (down)

3.47E-04

9

3

1

Putative anion exchanger (up)

8.62E-04

7

2

2

19 TMS proteins (down)

2.22E-03

2

2

0

   

Total: 14

Total: 55