Table 1 Significant motifs associated to nucleolar proteins implicated in ribosome biogenesis. The columns titled "C", "F" and "P" correspond to the three branches of the Gene Ontology: cellular component, molecular function and biological process respectively.
motif | C | F | P |
|---|---|---|---|
GATGAGA | nucleolus | - | ribosome biogenesis |
GATGAGAT | nucleolus | - | ribosome biogenesis |
ATGAGAT | nucleolus | - | ribosome biogenesis |
ATGAGATG | - | - | ribosome biogenesis |
TGAGATG | - | - | ribosome biogenesis and assembly |
TGAGATGA | - | - | ribosome biogenesis and assembly |
GAGATG | - | - | ribosome biogenesis and assembly |
GAGATGAG | nucleolus | - | ribosome biogenesis and assembly |
GAGATGA | nucleolus | - | ribosome biogenesis and assembly |
AGATGAG | nucleolus | - | ribosome biogenesis |
GATGAG | nucleolus | - | ribosome biogenesis |
GATGA | - | - | ribosome biogenesis |
ATGAGCT | nucleolus | - | ribosome biogenesis |
TGAGCT | nucleolus | - | rRNA processing |
GATGAGATGAGCT | |||
AAAAATT | nucleolus | - | ribosome biogenesis |
AAAAATTT | nucleolus complex | - | transcription from Pol I promoter |
AAAATT | nucleolus | - | ribosome biogenesis |
AAAATTT | nucleolus | - | ribosome biogenesis |
AAAATTTT | nucleolus | - | ribosome biogenesis |
AAATT | nucleolus | - | 35S primary transcript processing |
AAATTTTC | small nucleolar ribonucleoprotein complex | - | 35S primary transcript processing |
AAAAATTTTC |