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Table 1 Significant motifs associated to nucleolar proteins implicated in ribosome biogenesis. The columns titled "C", "F" and "P" correspond to the three branches of the Gene Ontology: cellular component, molecular function and biological process respectively.

From: Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs

motif C F P
GATGAGA nucleolus - ribosome biogenesis
GATGAGAT nucleolus - ribosome biogenesis
 ATGAGAT nucleolus - ribosome biogenesis
 ATGAGATG - - ribosome biogenesis
  TGAGATG - - ribosome biogenesis and assembly
  TGAGATGA - - ribosome biogenesis and assembly
   GAGATG - - ribosome biogenesis and assembly
   GAGATGAG nucleolus - ribosome biogenesis and assembly
   GAGATGA nucleolus - ribosome biogenesis and assembly
    AGATGAG nucleolus - ribosome biogenesis
     GATGAG nucleolus - ribosome biogenesis
     GATGA - - ribosome biogenesis
      ATGAGCT nucleolus - ribosome biogenesis
       TGAGCT nucleolus - rRNA processing
GATGAGATGAGCT    
AAAAATT nucleolus - ribosome biogenesis
AAAAATTT nucleolus complex - transcription from Pol I promoter
 AAAATT nucleolus - ribosome biogenesis
 AAAATTT nucleolus - ribosome biogenesis
 AAAATTTT nucleolus - ribosome biogenesis
  AAATT nucleolus - 35S primary transcript processing
  AAATTTTC small nucleolar ribonucleoprotein complex - 35S primary transcript processing
AAAAATTTTC