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Table 7 Genome prevalence of the consensus sequences constructed by aligning the motifs found significant by the algorithm, and functional characterization of the corresponding genes. The second column contains the total number of genes in the yeast genome in which the consensus sequence is found at least once in the upstream region. The third column reports one of the annotation terms to which the consensus sequence is associated, and the number of genes annotated to the term among the ones containing the consensus sequence.

From: Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs

Consensus sequence

Total genes

Annotated genes

GATGAGATAGCT

17

nucleolus (8)

AAAAATTTTC

233

nucleolus (37)

MCSCMTACAY

78

cytosolic ribosome (20)

ARACGCGTMG

15

DNA replication and chromosome cycle (2)

AAMYGCGAWCG

6

nucleosome (0)

GATGAGTCAY

5

amino-acid metabolism (3)

TGAAACA

560

sexual reproduction (26)

AGGGTGCA

40

siderophore transport (5)

CGGCGCCGAG

5

tricarboxylic acid cycle (3)

ACCCCT

434

alpha, alpha-trehalose phosphate synthase complex (UDP-forming) (2)

CCGGTGGC

17

26S proteasome (6)