Table 5 Probabilities calculated for putative functional assignments made by Reed et al. Bnumbers (unique IDs for E. coli genes) shown in italics are below the P cutoff (P > 0.8). Those in bold correspond to the gene assigned to the reaction in EcoCyc when one is assigned.
From: A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
E.C. # | Bnumber | P(has-function) | MAST E-val | HMMER E-val |
|---|---|---|---|---|
1.3.99.3 | b0221 | 0.05 | -- | 1e-4 |
b0039 | 0.80 | 1e-7 | 10e-13 | |
b1695 | 0.93 | 2e-9 | 4e-16 | |
b4187 | 0.003 | 6e-4 | 3e-4 | |
1.6.6.9 | b0997 | 1.0 | 1e-145 | 0 |
b1872 | 1.0 | 6e-147 | 0 | |
b3551 | 0.93 | 5e-95 | 0 | |
b1587 | 0.17 | 5e-16 | 2e-28 | |
b1588 | 0.05 | 6e-16 | 3e-26 | |
2.7.1.23 | b2615 | 1.0 | 3e-63 | 1e-144 |
b3916 | 2e-5 | 8e-4 | 1.0 | |
2.7.2.1 | b3115 | 1.0 | 5e-69 | 2e-170 |
b2296 | 1.0 | 2e-95 | 1e-261 | |
2.8.1.2 | b2521 | 0.91 | 1e-133 | 2e-208 |
b1757 | 0.05 | 2e-4 | 4e-12 |