Figure 3
From: A double classification tree search algorithm for index SNP selection
A test data set was downloaded from UW-FHCRC Variation Discovery Resource (SeattleSNPs). On the top of this table are the locations of the SNPs. For example, the first SNP is located on the 31st base. The last figure on every haplotype is the frequency. For example haplotype one (hap1) has frequency 1087. By our program, 10 index SNPs were selected from left to right numbered 1, 10, 13, 14, 15, 20, 21, 27, 29, and 36. The locations are in bold type. This is a minimum index SNP set. We tried to run the Best program. After one night, we cancelled the process without any results.