Table 4 Class II vs genes (cf. legend of table 3).
From: Detection of transposable elements by their compositional bias
HMM state | A. thaliana | |||
|---|---|---|---|---|
E1 | CG (-0.75) | CT (-0.51) | CC (-0.48) | CA (-0.29) |
E2 | CT (-0.59) | TA (0.35) | TC (-0.28) | TG (0.27) |
E3 | TC (-0.72) | CC (-0.58) | CG (-0.48) | AT (0.38) |
I | CC (-1.06) | CA (-0.48) | GC (-0.41) | GT (0.38) |
HMM state | C. elegans | |||
E1 | GT (0.42) | GC (0.41) | CC (0.35) | TG (-0.35) |
E2 | CG (0.54) | TG (0.43) | AG (0.38) | TA (0.33) |
E3 | GG (0.67) | GC (0.57) | CG (0.38) | CA (-0.36) |
I | AA (-0.26) | CG (0.22) | TC (0.15) | AC (0.13) |
HMM state | D. melanogaster | |||
E1 | AA (1.59) | TA (1.32) | GG (-1.28) | AT (1.24) |
E2 | GG (-0.84) | TT (0.67) | AA (0.64) | CT (-0.62) |
E3 | TA (1.47) | CC (-1.34) | AA (1.28) | TT (1.01) |
I | GC (-1.08) | CC (-1.00) | CG (-0.95) | TC (-0.76) |