From: Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Protein family | PDB ID | Correct | Useful info | Wrong |
---|---|---|---|---|
A. Proteins from Table 1 | ||||
Acetyglucosamine-6-phoshate deacyetylaseb | 1O12 | 6 | 1 | 0 |
Alcohol dehydrogenase | 1JVB | 2 | 1 | 1 |
CuZnSOD | 1SPD | 3 | 2 | 1 |
Cytochrome P450 | 1N4G | 6 | 4 | 0 |
Enolase | 2ONE | 6 | 2 | 0 |
Glyceroladhyde-3-phosphate dehydrogenase | 1DC4 | 2 | 2 | 3 |
Glycerol kinase | 1B05 | 7 | 1 | 0 |
Glutamate dehydrogenase | 1HWZ | 7 | 0 | 0 |
Inorganic pyrophosphatase | 1I6T | 3 | 2 | 0 |
Myoglobin | 1MBA | 4 | 1 | 0 |
Succinate dehydrogenase – FAD | 1NEK | 4 | 1 | 2 |
Succinate dehydrogenase – Fe/S | 1NEK | 4 | 0 | 0 |
Succinate dehydrogenase – Heme | 1NEK | 5 | 0 | 0 |
TATA box binding protein | 1TBP | n/ac | Â | Â |
Triosephosphate isomerase | 7TIM | 3 | 4 | 1 |
B. Additional examples | ||||
Acetate kinase | 1G99 | 4 | 4 | 0 |
Aconitase A | 7ACN | 8 | 3 | 5 |
Alanine racemase | 1L6F | 4 | 1 | 1 |
Arginyl-tRNA synthetase | 1F7U | 2 | 2 | 1 |
Biotin carboxylaseb | 1DV2 | 3 | 3 | 2 |
Catalase | 1GGF | 9 | 0 | 0 |
Citrate synthase | 1NXG | 8 | 1 | 0 |
Isocitrate dehydrogenases | 1IA2 | 3 | 0 | 0 |
Malate/lactate dehydrogenases | 1EMD | 6 | 1 | 0 |
Malate synthase | 1P7T | 6 | 0 | 0 |
Phosphomannomutase | 1P5D | 5 | 2 | 0 |
Selenocysteine lyase | 1ECX | 5 | 2 | 1 |
Threonine aldolase | 1LW5 | 6 | 2 | 0 |
Thymidylate synthase | 1AIQ | 4 | 0 | 1 |
Transaldolase | 1ONR | 1 | 1 | 1 |
Trehalose-6-phosphate synthase | 1UQU | 5 | 3 | 3 |