Table 3 Experimental verification of IAs corresponding to Ensembl 5' extensions. The extensions are separated according to whether the 5'-most Ensembl exon also existed in TWINSCAN and/or SGP2 (linked) or not (unlinked) (see Figure 3).
Experimentally verified Ensembl extensions | ||||
|---|---|---|---|---|
Ensembl extensions | Total tested | No amplimer | Amplimer correctly predicted | Amplimer but junction not correctly predicted |
linked | 60 | 36 (60%) | 11 (18%) | 13(22%) |
unlinked | 29 | 27 (93%) | 2 (7%) | 0 |